沈英嘉-滨海湿地生态系统教育部重点实验室（厦门大学）

基本信息

: 沈英嘉 教授; 办公地点：环境与生态学院大楼; Yingjia Shen; Office LocationCEE Building

详细资料 - 沈英嘉教授

个人履历 Brief CV

- 上海师范大学理学学士（2002）
- 上海师范大学理学硕士（2005）
- 美国迈阿密大学博士（2009）
- 研究助理教授美国德克萨斯州立大学(2010-2014)华盛顿大学圣路易斯(2013-2014)
- 厦门大学副教授（2014-现在）
- B.S. Shanghai Normal University（2002）
- M.S. Shanghai Normal University（2005）
- Ph.D in Botany, Miami University （2009）
- Research Assistant Professor, Texas State University（2010-2014）, Washington University (2013-2014)
- Associate Professor, Xiamen University（2014-present）

研究方向 Research Interests

系统生物学、分子毒理学 Systems biology;Molecular toxicology

代表性论文 Selected Publications

1.Yang K, Boswell M, Walter DJ, Downs KP, Gaston-Pravia K, Garcia T, Shen Y, Mitchell DL, Walter RB.UVB-induced Gene Expression in the Skin of XiphophorusmaculatusJp 163 B.Comp BiochemPhysiol C ToxicolPharmacol. 2014; 163:86-94 2.Garcia TI, Matos I, Shen Y, Pabuwal V, Coelho MM, Wakamatsu Y, Schartl M, Walter RB. Novel method for analysis of allele specific expression in triploid Oryziaslatipes reveals consistent pattern of allele exclusion. PLoS One. 2014;9:6 3.Schartl M*+, Walter RB*+, Shen Y, GarciaT, Catchen, JC, Amores A, Braasch I, Chalopin D, Volff JN, Fuerstenberg S, Boore J, Lesch KP, Bisazza A, Minx P, Wilson RK, Postlethwait J, and Warren CW. The genome of the platyfish, Xiphophorusmaculatus: insights into complex traits. Nature Genetics. 2013; 45:567-72 4.Pabuwal V, Boswell M, Pasquali A, Wise SS, Kumar S, Shen Y, Garcia T, Lacerte C, Wise JP Jr, Wise JP Sr, Warren W, Walter RB.Transcriptomic analysis of cultured whale skin cells exposed to hexavalent chromium [Cr(VI)]. AquatToxicol. 2013; 134-135C:74-81. 5.Shen Y, Garcia T, Pabuwal V, Boswell M, Pasquali A, Beldorth I, Warren W, Schartl M, Cresko WA, Walter RB.Alternative strategies for development of a reference transcriptome for quantification of allele specific expression in organisms having sparse genomic resources.Comp Biochem Physiol Part D Genomics Proteomics. 2012;8:11-16. 6.Shen Y, Venu RC, Nobuta K, Wu X, Notibula V, Demirci C, Meyers BC, Wang GL, and Li QQ. Transcriptome Dynamics Through Alternative Polyadenylation in Developmental and Environmental Responses in PlantsRevealed by Deep Sequencing. Genome Research. 2011, 21:1478-1486. 7.Garcia T, Shen Y, Douglas Crawford D, Oleksiak MF,Whitehead A, Walter RB. RNA-Seq reveals complex genetic response to deepwater horizon oil release in Fundulus grandis.BMC genomics. 2012; 13:474. 8.Shen Y, Catchen J, Garcia T, Amores A, Beldroth I, Wagner JR, Zhang Z, Postlethwait JH, Warren W ,Schartl M, and Walter RB. Identification of SNPs between XiphophorusLines and Species for Assessing Allele Specific Gene Expression within Interspecies Hybrids. Comparative Biochemistry and Physiology Part C: Toxicology and Pharmacology. 2012 ,155:102-108. 9.Kevin P. Downs, Yingjia Shen, Amanda Pasquali, Ion Beldorth, Markita Savage, Katelyn Gallier, Tzintzuni Garcia, Rachell E. Booth, Ronald B. Walter..Characterization of telomeres and telomerase expression in Xiphophorus. Comparative Biochemistry and Physiology Part C: Toxicology and Pharmacology. 2012, 155: 89-94. 10.Garcia T, Shen Y, Catchen J, Amores A,Schartl M, Postlethwait JH and Walter RB. Effects of short read quality and quantity on a de novo vertebrate Transcriptome assembly. Comparative Biochemistry and Physiology Part C: Toxicology and Pharmacology. 2012,155:95-101. 11.Zheng J, Xing D, Wu X, Shen Y, Kroll DM and Li QQ. Ratio-based Analysis of Differential mRNA Processing and Expression (RADPRE) of a Polyadenylation Factor Mutant Using Arabidopsis Genomic Tiling Microarray. PLoS ONE 2011, 6:e14719. 12.Ji G, Wu X, Shen Y, Huang J, Wang Z and Li QQ. Dec 2010. Classification-Based Prediction Models of Messenger RNA Polyadenylation Sites. J Theor Biol. Aug 2010,265:287-96. 13.Shen Y, Ji G, Haas B, Wu X, Zheng, J, Reese, G, Li, QQ. Genome level analysis of rice mRNA 3

部分科研课题 Selected Research Programmes

福建省自然科学基金项目：沈英嘉—水体重金属污染的鱼类分子生物标记物研究（2015J0507），3万，2015.04-2018.8 国家自然科学基金-面上项目：海洋青鱂鱼基因组结构及其对盐度适应的分子机理的研究（31671318），60万，2017.01-2020.12

荣誉奖励 Honors and rewards

迈阿密大学Charles Heimsch